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Data Analysis

    Data Analysis

    Please contact the LRGC to discuss data analysis of RNA-seq, single cell or Spatial Transcriptomic data.

      Flow_250.png                      10X Genomics - Venrock

    Enrichment Analysis

    • Enrichr
    • Reactome
    • g:Profiler
    • Metascape
    • GSEA
    • DAVID
    • Panther
    • GOrilla

    Network Analysis

    • String
    • Cytoscape
    • Interferome
    • GeneMania

    Biological Interpretation

    • AltAnalyze
    • CiiiDER
    • The Bio-Analytic Resource for Plant Biology

    Other NGS Tools

    • FastQC
    • PRINSEQ
    • Galaxy
    • IGV
    • R Power Analysis
    • Venny 2.1
    • DeepVenn
    • VolcaNoseR
    • Heatmapper
    • ChEA3
    • TimeOR

    10X Genomics Analysis

    • Cell Ranger
    • Space Range
    • Loupe Browser

    DNA Analysis

    • Franklin (variant classification)
    • AmpliCancer - variant discovery tool
    • SNPnexus
    • Genome Analysis Tool Kit (GATK)
    • Gemini (variant annotation)
    • VarAFT
    • Mutation Taster

    miRNA Analysis

    • miRWalk 2.0
    • miRMaster 2.0
    • mirBase
    • TargetScan
    • Qiagen GeneGlobe
    • Tissue Atlas

    circRNA Analysis

    • circBase
    • Circular RNA Interactome

    ChIP-seq Analysis

    • ChIP-seq Peak Annotation and Functional Analysis

    Data Analysis

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